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Jonathan Rees
jar301
https://mumble.net/~jar/
taxa, logic, reasoning, data integration
Monday
, October 2
09:00 EDT
Welcoming remarks and guide to the meeting
Ballroom A
09:40 EDT
[Keynote] Roderic D.M. Page - Towards a Biodiversity Knowledge Graph
Ballroom A
Roderic D.M. Page
10:30 EDT
Break
Ballroom B
11:00 EDT
[Contributed - Topic] What do People, DiSSCo, Brazil, Symbiota, BISON and Google have in common?
Ballroom A
Gail Kampmeier
[Contributed] Associating Occurrences with Genes, Phenotypes, and Environments through the Distributed System of Scientific Collections (DiSSCo)
Ballroom A
Dimitris Koureas
[W01 - Topic] Establishing a global registration system of algal names and types
Chaudiere
Andreas Kohlbecker
[W01] Introduction into Phycobank: challenges, concepts and solutions
Chaudiere
Andreas Kohlbecker
[W19 - Topic] Construction of biodiversity knowledge graphs driven by federated text mining tools
Capitale
Sophia Ananiadou • Riza Batista-Navarro • Teodor Georgiev • Evangelos Pafilis • Lyubomir Penev • Viktor Senderov • Axel J. Soto
[W19] EXTRACT 2.0: interactive identification of biological entities mentioned in text to assist database curation and knowledge extraction
Capitale
Evangelos Pafilis
11:15 EDT
[Contributed] Proposed Extension to Darwin Core for People and their Roles in the Curation of Physical and Digital Objects
Ballroom A
David Shorthouse
11:30 EDT
[W19] Building Your Own Big Data Analysis Infrastructure for Biodiversity Science
Capitale
Matthew Collins
11:45 EDT
[Contributed] Symbiota2
Ballroom A
Mary E. Barkworth
[W19] Argo as a platform for integrating distinct biodiversity analytics tools into workflows for building graph databases
Capitale
Riza Batista-Navarro
12:00 EDT
[Contributed] Taxonomy and Distribution in Big Data Use Cases from BISON and ITIS
Ballroom A
Gerald Guala
[W19] OpenBiodiv: an Implementaion of a Semantic System Running on top of the Biodiversity Knowledge Graph
Capitale
Viktor Senderov
12:30 EDT
Lunch provided
Ballroom C
13:30 EDT
[Social Event] Newcomers Meet & Greet
Capitale
Dimitris Koureas • James A. Macklin • Cyndy Parr
14:00 EDT
[S28 - Topic] Financial Models for Sustaining Biodiversity Informatics Products
Ballroom A
James H. Beach
[S28] The Arctos Community Model for Sustaining and Enriching Access to Biodiversity Data
Ballroom A
John Wieczorek
[W03 - Topic] Towards robust interoperability in multi-omic approaches to biodiversity monitoring
Capitale
Pier Luigi Buttigieg • Robert Hanner • Luke Thompson
[W03] Environmental samples, eDNA and HTS libraries – data standard proposals from the Global Genome Biodiversity Network (GGBN)
Capitale
Walter G. Berendsohn
14:15 EDT
[S28] Interoperability, Attribution, and Value in the Web of Natural History Museum Data
Ballroom A
Andrew Bentley
[W03] Metadata Standards for Genomic Sequence Data: Past and Future of MIxS Standards Family
Capitale
Pelin Yilmaz
14:30 EDT
[S04] Expanding the Ocean Biogeographic Information System (OBIS) beyond species occurrences
Chaudiere
Daphnis De Pooter
[S28] Sustainability in Biodiversity Software Development: More financing or better practices?
Ballroom A
Matt Yoder
14:45 EDT
[S28] Maintenance and development of Symbiota2, a platform for data sharing and visualization
Ballroom A
Mary E. Barkworth
15:00 EDT
[S28] Sustaining Software for Biological Collections Computing
Ballroom A
James H. Beach
[W03] Semantically Defining Populations for 'Omics Research
Capitale
Ramona L. Walls
15:15 EDT
[S28] DINA: Open Source and Open Services - A Modern Approach for Sustainable Natural History Collection Management Systems
Ballroom A
Stefan Daume • Falko Glöckler • Elspeth Margaret Haston • Jana Hoffmann • James A. Macklin • Fredrik Ronquist
15:30 EDT
Break
Ballroom B
15:40 EDT
[Computer Demo] OpenBiodiv: an Implementation of a Semantic System Running on top of the Biodiversity Knowledge Graph
Ballroom B
Teodor Georgiev • Viktor Senderov
16:00 EDT
[Contributed] Use of Online Species Occurrence Databases in Published Research since 2010
Ballroom A
Joan E Ball-Damerow
[W03] The Genomic Observatories Metadatabase
Capitale
John Deck
16:30 EDT
[Contributed] Pipedream or pipeline: delivering regular, reliable, up-to-date information on biodiversity through repeatable workflows
Ballroom A
Peter Desmet
[W03] Rewards and Challenges of eDNA Sequencing with Multiple Genetic Markers for Marine Observation Programs
Capitale
Kathleen J Pitz
16:45 EDT
[W03] Linking molecular and morphological biodiversity evidence by building a single name space
Capitale
Dmitry Schigel
19:00 EDT
[Social Event] Night at the Museum
Canadian Museum of Nature, 240 McLeod St, Ottawa
Tuesday
, October 3
10:30 EDT
Break
Ballroom B
10:40 EDT
[Computer Demo] TaxonWorks
Ballroom B
Matt Yoder
11:15 EDT
[W07] Living Atlases Architecture
Chaudiere
Christian Gendreau • Dave Martin • Manash Shah
12:15 EDT
[S02] Using YesWorkflow hybrid queries to reveal data lineage from data curation activities
Ballroom A
Bertram Ludaescher
12:30 EDT
[Interest Group] Technical Architecture Meeting
Capitale
Paul J. Morris
Lunch on your own
N/A
Wednesday
, October 4
09:00 EDT
Wild Ideas
Ballroom A
09:40 EDT
[Keynote] Javier de la Torre - Everything happens somewhere, multiple times
Ballroom A
Javier de la Torre
10:30 EDT
Break
Ballroom B
10:40 EDT
[Computer Demo] Desktop or remote knowledge base management systems for taxonomic data and identification keys: Xper2 and Xper3
Ballroom B
Régine Vignes-Lebbe
11:00 EDT
[S16] BHL: A Source for Big Data Analysis
Ballroom A
Mike Lichtenberg
11:15 EDT
[S16] TAXREF-LD: A Reference Thesaurus for Biodiversity on the Web of Linked Data
Ballroom A
Franck Michel
11:30 EDT
[S16] A High-throughput Data Ingest Pipeline for Semantic Data-stores
Ballroom A
John Deck
11:45 EDT
[S16] Using ontologies to explore floral evolution in a non-model plant clade
Ballroom A
Annika L Smith
Thursday
, October 5
09:00 EDT
Standards in Action: The Darwin Core Hour
Ballroom A
Deborah Paul • John Wieczorek • Paula F Zermoglio
09:40 EDT
[Keynote] Pamela Soltis - Linking Heterogeneous Data in Biodiversity Research
Ballroom A
Pamela S. Soltis
10:30 EDT
Posters (Odd Numbers)
Ballroom B
10:40 EDT
[Computer Demo] Developing a Module for Generating Formalized Semantic Morphological Descriptions for Morph∙D∙Base
Ballroom B
Sandra Meid • Lars Vogt
11:00 EDT
[Interest Group] Species Information
Chaudiere
Francisco Pando
[S18] Building a community of practice through capacity enhancement mentoring
Ballroom A
Laura Russell
11:15 EDT
[S18] What’s Missing From All the Portals?
Ballroom A
Sharon Grant
11:30 EDT
[S18] An Example of Synergy in Data Mobilization: the Arctos-VertNet Nexus
Ballroom A
David Bloom
11:45 EDT
[S18] Towards Insect Digital Collections and Data Publishing: A journey for the GBIF-funded African Insect Atlas Collaborative Project
Ballroom A
Boikhutso Lerato Rapalai
12:00 EDT
[S18] Setting up an Interdisciplinary Data Infrastructure: Why Cooperation between Domain Experts and Computer Scientists Matters - An Experience Report from the GFBio Project
Ballroom A
Jana Hoffmann • Felicitas Löffler
16:00 EDT
[W17] The EDIT Platform for Cybertaxonomy, a Brief Overview
Ballroom A
Andreas Kohlbecker
16:15 EDT
[W17] A Comprehensive and Standards-Aware Common Data Model (CDM) for Taxonomic Research
Ballroom A
Andreas Müller
16:30 EDT
[W17] The CDM Applied: Handling of Names, Taxa and Concepts in a Conservation Context
Ballroom A
Walter G. Berendsohn
16:45 EDT
[W17] The CDM Applied: Unit-Derivation, from Field Observations to DNA Sequences
Ballroom A
Andreas Müller
17:00 EDT
[W17] EDIT Platform Web Services in the Biodiversity Infrastructure Landscape
Ballroom A
Andreas Kohlbecker
17:15 EDT
[W17] EDIT Platform Projects: What’s Next
Ballroom A
Walter G. Berendsohn
17:45 EDT
[Social Event] Banquet
Canadian Museum of History, 100 Laurier Street, Gatineau (Hull), Quebec
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Canadian Museum of History, 100 Laurier Street, Gatineau (Hull), Quebec
Canadian Museum of Nature, 240 McLeod St, Ottawa
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